STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumBFumarate hydratase class I%2C anaerobic. (188 aa)    
Predicted Functional Partners:
ttdA
L(+)-tartrate dehydratase subunit alpha.
 
 0.999
tme
NADP-dependent malic enzyme.
 
 
 0.971
ldh
L-lactate dehydrogenase.
  
 
 0.895
argH
Argininosuccinate lyase.
    
 0.876
porA
Pyruvate synthase subunit porA.
     
 0.816
SCJ22580.1
Methylmalonyl-CoA carboxyltransferase 5S subunit.
    
 0.785
nqo1
NADH-quinone oxidoreductase subunit 1.
  
 
 0.769
pflB
Formate acetyltransferase.
   
 
 0.765
pckA
Phosphoenolpyruvate carboxykinase [ATP].
   
 
 0.763
nadB
L-aspartate oxidase.
    
  0.743
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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