STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimNt(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN. (353 aa)    
Predicted Functional Partners:
gcp_2
t(6)A37 threonylcarbamoyladenosine biosynthesis protein.
  
 
 0.893
ydiB
ADP-binding protein.
    
 0.893
ydiC
UGMP family protein.
    
 0.893
prmC
Release factor glutamine methyltransferase.
 
  
 0.847
ywlE
Low molecular weight protein-tyrosine-phosphatase ywlE.
    
  0.835
glyA
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase.
    
 0.802
zupT_2
Zinc transporter ZupT.
       0.720
rpiB_3
Ribose-5-phosphate isomerase B.
    
  0.672
prfA
Peptide chain release factor 1.
     
 0.663
gcp_1
t(6)A37 threonylcarbamoyladenosine biosynthesis protein.
  
 
 0.628
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.