STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolC_25-dehydro-2-deoxygluconokinase. (338 aa)    
Predicted Functional Partners:
iolB
5-deoxy-glucuronate isomerase.
 
 0.992
iolD
3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione hydrolase.
 
 
 0.982
iolE_3
Inosose dehydratase.
 
 
  0.970
idhA
Inositol 2-dehydrogenase.
 
 
  0.949
iolE_1
Inosose dehydratase.
 
 
  0.896
dgoA_1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
 
 0.824
rpe
Ribulose-phosphate 3-epimerase.
  
 0.776
rpiB_5
Ribose-5-phosphate isomerase B.
  
 
 0.724
guaA_1
GMP synthase [glutamine-hydrolyzing].
  
 
 0.723
guaA_2
GMP synthase [glutamine-hydrolyzing].
  
 
 0.723
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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