STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspEThiosulfate sulfurtransferase PspE precursor. (134 aa)    
Predicted Functional Partners:
SCJ67899.1
Probable rRNA maturation factor.
   
  0.895
rpsQ
30S ribosomal protein S17.
   
  0.870
sodA
Superoxide dismutase [Mn].
   
 
 0.840
rplQ
50S ribosomal protein L17.
  
   0.798
tlpA
Cytochrome c biogenesis protein tlpA.
    
 0.796
rplU
50S ribosomal protein L21.
  
   0.795
rplK
50S ribosomal protein L11.
   
   0.786
rplM
50S ribosomal protein L13.
   
   0.746
rplX
50S ribosomal protein L24.
   
   0.744
rplO
50S ribosomal protein L15.
   
   0.743
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.