STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ60555.1Domain of uncharacterised function (DUF2088). (473 aa)    
Predicted Functional Partners:
tpiA_2
Triosephosphate isomerase.
 
   
 0.936
SCJ17986.1
NAD synthetase.
 
  
 0.780
SCJ18024.1
Phosphoribosylaminoimidazole carboxylase%2C catalytic subunit.
 
  
 0.775
ldh
L-lactate dehydrogenase.
     
 0.757
tme
NADP-dependent malic enzyme.
    
  0.687
SCJ18062.1
Protein of uncharacterised function DUF111.
 
    0.508
SCJ47900.1
Protein of uncharacterised function DUF111.
 
    0.492
yhdN_7
General stress protein 69.
       0.440
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.