STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqgN5-formyltetrahydrofolate cyclo-ligase family protein. (203 aa)    
Predicted Functional Partners:
purN
Phosphoribosylglycinamide formyltransferase.
  
 
 0.896
folD
Bifunctional protein FolD.
    
 0.893
fhs
Formate--tetrahydrofolate ligase.
   
 0.823
alr
Alanine racemase.
       0.788
SCJ74545.1
Uncharacterised protein.
       0.773
rsmD
Ribosomal RNA small subunit methyltransferase D.
     
 0.715
glyA
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase.
  
 0.684
coaD
Phosphopantetheine adenylyltransferase.
       0.666
SCJ74475.1
ACT domain-containing protein.
       0.624
fmt
Methionyl-tRNA formyltransferase.
  
 
 0.593
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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