STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioYBiotin ECF transporter S component BioY. (177 aa)    
Predicted Functional Partners:
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
 
 0.978
ecfA2
Energy-coupling factor transporter ATP-binding protein EcfA2.
 
 
 0.977
ecfT_4
Energy-coupling factor transporter transmembrane protein EcfT.
 
 0.973
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT.
  
 0.962
ecfT_3
Energy-coupling factor transporter transmembrane protein EcfT.
  
 0.957
SCJ77854.1
Protein of uncharacterised function (DUF1284).
 
 
  0.921
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
 0.887
SCJ60986.1
Uncharacterised protein.
   
 0.818
birA
Bifunctional protein BirA.
 
   
 0.735
accC
Biotin carboxylase.
 
  
  0.597
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.