STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM64858.1Orn/Lys/Arg decarboxylase, major domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01276; match to protein family HMM PF03711. (501 aa)    
Predicted Functional Partners:
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
 
  0.905
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.859
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.853
EFM64700.1
ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07728.
   
 
 0.730
EFM64732.1
Aluminum resistance protein; Identified by match to protein family HMM PF01053; match to protein family HMM PF06838.
 
     0.702
EFM64865.1
PSP1 C-terminal domain protein; Identified by match to protein family HMM PF04468.
  
    0.565
EFM64863.1
Methyltransferase domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF08241; Belongs to the methyltransferase superfamily.
  
    0.556
EFM64856.1
Putative DNA polymerase III, delta' subunit.
       0.552
EFM64841.1
six-Cys-in-45 modification radical SAM protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03974.
 
     0.526
yraL
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.456
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.