STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM64147.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (456 aa)    
Predicted Functional Partners:
EFM64122.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
  0.981
EFM64120.1
Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.950
EFM64171.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
  0.913
EFM65310.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
  0.908
EFM64154.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
  0.903
EFM64659.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
  0.870
EFM64158.1
Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.756
EFM65117.1
ABC transporter, ATP-binding family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
     0.746
EFM64124.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.703
EFM64142.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
0.689
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.