STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM64452.1CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (283 aa)    
Predicted Functional Partners:
EFM64291.1
SH3 domain protein; Identified by match to protein family HMM PF01832; match to protein family HMM PF06347; match to protein family HMM PF08239.
   
   0.744
EFM64472.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
  
     0.679
EFM65106.1
Hypothetical protein.
  
     0.573
EFM64474.1
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
 
     0.495
EFM65119.1
Hypothetical protein.
  
     0.470
EFM64604.1
Transporter, auxin efflux carrier (AEC) family protein; Identified by match to protein family HMM PF03547.
  
     0.424
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
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