Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFM64276.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
EFM64247.1
Hypothetical protein.
 
     0.945
EFM64285.1
Hypothetical protein.
 
     0.865
EFM64283.1
Identified by match to protein family HMM PF02534.
 
     0.845
EFM64365.1
Hypothetical protein.
 
   
 0.784
EFM64267.1
Hypothetical protein.
 
   
 0.784
EFM64448.1
Hypothetical protein.
 
     0.775
EFM65115.1
Hypothetical protein.
 
     0.769
EFM64416.1
Identified by match to protein family HMM PF02534.
 
     0.765
EFM64249.1
Hypothetical protein.
 
    0.765
EFM64255.1
Identified by match to protein family HMM PF00877.
 
     0.760
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
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