STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM64158.1Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185. (198 aa)    
Predicted Functional Partners:
EFM64152.1
Putative septum site-determining protein MinC; Identified by match to protein family HMM PF00005.
 
     0.947
EFM64154.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.947
EFM64157.1
Hypothetical protein.
 
     0.914
EFM64151.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.907
EFM64153.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.906
EFM64155.1
Transcriptional regulator, TetR family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00440.
 
     0.886
EFM64171.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.773
EFM65118.1
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00005.
 
     0.770
EFM65310.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
     0.766
EFM64147.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.756
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
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