Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
EFM64916.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
EFM63938.1
DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.
  
     0.764
EFM64856.1
Putative DNA polymerase III, delta' subunit.
  
    0.705
EFM63939.1
DNA replication protein DnaC.
  
     0.704
EFM64629.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
     0.616
EFM65446.1
Identified by match to protein family HMM PF02810.
  
     0.539
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.519
EFM65461.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.507
EFM64647.1
Hypothetical protein.
  
     0.474
EFM64922.1
Serine-type D-Ala-D-Ala carboxypeptidase; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
       0.461
EFM64701.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.452
Your Current Organism:
Peptostreptococcus stomatis
NCBI taxonomy Id: 596315
Other names: P. stomatis DSM 17678, Peptostreptococcus stomatis DSM 17678, Peptostreptococcus stomatis str. DSM 17678, Peptostreptococcus stomatis strain DSM 17678
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