STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV19162.1Hypothetical protein; 3.1.21.3. (197 aa)    
Predicted Functional Partners:
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.959
EEV19164.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 
 0.944
EEV19165.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 
 0.938
EEV20584.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Identified by match to protein family HMM PF02384; match to protein family HMM PF04313.
  
 
 0.784
EEV20212.1
N-6 DNA Methylase; Identified by match to protein family HMM PF01170; match to protein family HMM PF02384.
  
 
 0.784
EEV19070.1
Type I restriction modification DNA specificity domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 
 0.782
EEV19163.1
Hypothetical protein.
       0.566
EEV19159.1
Putative toxin-antitoxin system toxin component, PIN family; Identified by match to protein family HMM TIGR00305.
       0.525
EEV19160.1
Hypothetical protein; Identified by glimmer; putative.
       0.515
EEV19161.1
Addiction module antitoxin, RelB/DinJ family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.515
Your Current Organism:
Treponema vincentii
NCBI taxonomy Id: 596324
Other names: T. vincentii ATCC 35580, Treponema vincentii ATCC 35580, Treponema vincentii str. ATCC 35580, Treponema vincentii strain ATCC 35580
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