STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV20102.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (581 aa)    
Predicted Functional Partners:
EEV20101.1
Conserved hypothetical protein TIGR03982; Identified by match to protein family HMM PF00005.
 
    
0.825
EEV20103.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.823
EEV21186.1
Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.709
EEV19098.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
  
  0.679
EEV19203.1
Transcriptional regulator, TetR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00440.
  
     0.662
EEV21535.1
ABC transporter, ATP-binding family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
  
  0.644
EEV20470.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
  
  0.640
EEV19505.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
  
  0.628
EEV19114.1
Conserved hypothetical protein TIGR02185; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.626
EEV19115.1
Cobalt transport protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
  
  0.624
Your Current Organism:
Treponema vincentii
NCBI taxonomy Id: 596324
Other names: T. vincentii ATCC 35580, Treponema vincentii ATCC 35580, Treponema vincentii str. ATCC 35580, Treponema vincentii strain ATCC 35580
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