Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEV19769.1 | EEV20497.1 | TREVI0001_1265 | TREVI0001_0319 | Hypothetical protein. | Hypothetical protein. | 0.714 |
EEV19769.1 | EEV20538.1 | TREVI0001_1265 | TREVI0001_1399 | Hypothetical protein. | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | 0.573 |
EEV19769.1 | EEV20858.1 | TREVI0001_1265 | TREVI0001_1715 | Hypothetical protein. | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 0.770 |
EEV19769.1 | EEV21098.1 | TREVI0001_1265 | TREVI0001_1457 | Hypothetical protein. | Hypothetical protein. | 0.773 |
EEV20497.1 | EEV19769.1 | TREVI0001_0319 | TREVI0001_1265 | Hypothetical protein. | Hypothetical protein. | 0.714 |
EEV20497.1 | EEV20538.1 | TREVI0001_0319 | TREVI0001_1399 | Hypothetical protein. | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | 0.527 |
EEV20497.1 | EEV20858.1 | TREVI0001_0319 | TREVI0001_1715 | Hypothetical protein. | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 0.691 |
EEV20497.1 | EEV21098.1 | TREVI0001_0319 | TREVI0001_1457 | Hypothetical protein. | Hypothetical protein. | 0.754 |
EEV20537.1 | EEV20538.1 | TREVI0001_1398 | TREVI0001_1399 | Acylphosphatase; Identified by match to protein family HMM PF00708. | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | 0.800 |
EEV20537.1 | EEV20539.1 | TREVI0001_1398 | TREVI0001_1400 | Acylphosphatase; Identified by match to protein family HMM PF00708. | Hypothetical protein; Identified by glimmer; putative. | 0.563 |
EEV20538.1 | EEV19769.1 | TREVI0001_1399 | TREVI0001_1265 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Hypothetical protein. | 0.573 |
EEV20538.1 | EEV20497.1 | TREVI0001_1399 | TREVI0001_0319 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Hypothetical protein. | 0.527 |
EEV20538.1 | EEV20537.1 | TREVI0001_1399 | TREVI0001_1398 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Acylphosphatase; Identified by match to protein family HMM PF00708. | 0.800 |
EEV20538.1 | EEV20539.1 | TREVI0001_1399 | TREVI0001_1400 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Hypothetical protein; Identified by glimmer; putative. | 0.563 |
EEV20538.1 | EEV20858.1 | TREVI0001_1399 | TREVI0001_1715 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 0.542 |
EEV20538.1 | EEV21098.1 | TREVI0001_1399 | TREVI0001_1457 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Hypothetical protein. | 0.627 |
EEV20538.1 | gmhB | TREVI0001_1399 | TREVI0001_2603 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | D,D-heptose 1,7-bisphosphate phosphatase; Identified by match to protein family HMM PF00483; match to protein family HMM PF08645; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662. | 0.574 |
EEV20538.1 | polA | TREVI0001_1399 | TREVI0001_1134 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.462 |
EEV20538.1 | ruvA | TREVI0001_1399 | TREVI0001_2273 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.464 |
EEV20538.1 | ybeY | TREVI0001_1399 | TREVI0001_1034 | Histidinol phosphate phosphatase HisJ family protein; Belongs to the PHP hydrolase family. HisK subfamily. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.698 |
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