node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEV19838.1 | EEV20059.1 | TREVI0001_1335 | TREVI0001_0825 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | 0.417 |
EEV19838.1 | EEV20855.1 | TREVI0001_1335 | TREVI0001_1711 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | 0.970 |
EEV19838.1 | EEV20913.1 | TREVI0001_1335 | TREVI0001_1354 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.986 |
EEV19838.1 | EEV21188.1 | TREVI0001_1335 | TREVI0001_1549 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Two component regulator propeller; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07494. | 0.999 |
EEV19838.1 | EEV21615.1 | TREVI0001_1335 | TREVI0001_1379 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194. | 0.994 |
EEV19838.1 | EEV21616.1 | TREVI0001_1335 | TREVI0001_1380 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | CheW-like protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01584. | 0.986 |
EEV19838.1 | EEV21617.1 | TREVI0001_1335 | TREVI0001_1381 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative CheR methyltransferase, SAM binding domain protein; Overlaps another CDS with the same product name; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01739. | 0.986 |
EEV19838.1 | fliN | TREVI0001_1335 | TREVI0001_0833 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.983 |
EEV19838.1 | nifJ | TREVI0001_1335 | TREVI0001_1411 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.901 |
EEV19838.1 | rpoN | TREVI0001_1335 | TREVI0001_0532 | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395. | 0.734 |
EEV20059.1 | EEV19838.1 | TREVI0001_0825 | TREVI0001_1335 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.417 |
EEV20059.1 | EEV20855.1 | TREVI0001_0825 | TREVI0001_1711 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | 0.894 |
EEV20059.1 | EEV21188.1 | TREVI0001_0825 | TREVI0001_1549 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Two component regulator propeller; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07494. | 0.570 |
EEV20059.1 | EEV21615.1 | TREVI0001_0825 | TREVI0001_1379 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194. | 0.528 |
EEV20059.1 | fliN | TREVI0001_0825 | TREVI0001_0833 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.924 |
EEV20855.1 | EEV19838.1 | TREVI0001_1711 | TREVI0001_1335 | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | Hypothetical protein; Overlaps another CDS with the same product name; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.970 |
EEV20855.1 | EEV20059.1 | TREVI0001_1711 | TREVI0001_0825 | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | 0.894 |
EEV20855.1 | EEV20913.1 | TREVI0001_1711 | TREVI0001_1354 | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.956 |
EEV20855.1 | EEV21188.1 | TREVI0001_1711 | TREVI0001_1549 | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | Two component regulator propeller; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07494. | 0.992 |
EEV20855.1 | EEV21615.1 | TREVI0001_1711 | TREVI0001_1379 | Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158. | Identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194. | 0.903 |