STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV20625.1Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (1526 aa)    
Predicted Functional Partners:
EEV20624.1
Hypothetical protein; Identified by glimmer; putative.
       0.746
EEV21488.1
Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.629
EEV21188.1
Two component regulator propeller; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07494.
   
 0.617
vapC-3
PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.543
EEV20623.1
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein.
       0.543
EEV21448.1
FG-GAP repeat protein.
  
 0.512
EEV19336.1
Peptidase, S8/S53 family; Identified by match to protein family HMM PF00082; Belongs to the peptidase S8 family.
  
 0.512
EEV20340.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254.
    
 0.506
EEV19339.1
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.441
EEV19340.1
TonB-dependent receptor plug domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
    
 
 0.441
Your Current Organism:
Treponema vincentii
NCBI taxonomy Id: 596324
Other names: T. vincentii ATCC 35580, Treponema vincentii ATCC 35580, Treponema vincentii str. ATCC 35580, Treponema vincentii strain ATCC 35580
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