STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEV19458.1Identified by match to protein family HMM PF00691. (436 aa)    
Predicted Functional Partners:
EEV19769.1
Hypothetical protein.
 
 0.919
EEV19457.1
LysM domain protein; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.
 
 
 
 0.905
EEV19456.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
   0.804
EEV21493.1
LysM domain protein; Identified by match to protein family HMM PF01476.
 
 
 0.728
EEV20990.1
Competence/damage-inducible domain protein CinA; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.
    
  0.679
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.679
EEV19459.1
Tetratricopeptide repeat protein.
       0.668
EEV20019.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
 
 
 0.659
motB
Flagellar motor protein MotB; Identified by match to protein family HMM PF00691.
  
0.651
EEV21188.1
Two component regulator propeller; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07494.
   
 0.638
Your Current Organism:
Treponema vincentii
NCBI taxonomy Id: 596324
Other names: T. vincentii ATCC 35580, Treponema vincentii ATCC 35580, Treponema vincentii str. ATCC 35580, Treponema vincentii strain ATCC 35580
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