Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEK17589.1 | EEK17600.1 | PORUE0001_0206 | PORUE0001_0204 | Starch synthase catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08323. | Hypothetical protein; Identified by glimmer; putative. | 0.419 |
EEK17592.1 | EEK17600.1 | PORUE0001_0203 | PORUE0001_0204 | Putative ACR, COG1399; Identified by match to protein family HMM PF02620. | Hypothetical protein; Identified by glimmer; putative. | 0.572 |
EEK17592.1 | rpmF | PORUE0001_0203 | PORUE0001_0202 | Putative ACR, COG1399; Identified by match to protein family HMM PF02620. | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | 0.971 |
EEK17600.1 | EEK17589.1 | PORUE0001_0204 | PORUE0001_0206 | Hypothetical protein; Identified by glimmer; putative. | Starch synthase catalytic domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF08323. | 0.419 |
EEK17600.1 | EEK17592.1 | PORUE0001_0204 | PORUE0001_0203 | Hypothetical protein; Identified by glimmer; putative. | Putative ACR, COG1399; Identified by match to protein family HMM PF02620. | 0.572 |
EEK17600.1 | rpmF | PORUE0001_0204 | PORUE0001_0202 | Hypothetical protein; Identified by glimmer; putative. | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | 0.550 |
rpmF | EEK17592.1 | PORUE0001_0202 | PORUE0001_0203 | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | Putative ACR, COG1399; Identified by match to protein family HMM PF02620. | 0.971 |
rpmF | EEK17600.1 | PORUE0001_0202 | PORUE0001_0204 | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | Hypothetical protein; Identified by glimmer; putative. | 0.550 |