STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEK16399.1Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244. (909 aa)    
Predicted Functional Partners:
yfiO
Outer membrane assembly lipoprotein YfiO; Identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302.
 
 
 0.937
ompH
Outer membrane protein; Identified by match to protein family HMM PF03938.
 
  
 0.913
EEK16348.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.906
EEK16292.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
 
  
 0.851
EEK16691.1
PPIC-type PPIASE domain protein; Identified by match to protein family HMM PF00639.
  
 
 0.825
EEK16400.1
Hypothetical protein.
 
 
 
 0.814
EEK17610.1
Hypothetical protein.
 
 
 0.813
EEK16216.1
Hypothetical protein.
  
 
 0.788
lepB
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
  
  
 0.775
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.774
Your Current Organism:
Porphyromonas uenonis 603
NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.