STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEK16860.1Identified by match to protein family HMM PF08885. (332 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.890
EEK16333.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.764
EEK16589.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.764
EEK16167.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.764
EEK16815.1
Hypothetical protein; Identified by glimmer; putative.
   
 0.764
EEK17653.1
Hypothetical protein; Overlaps another CDS with the same product name; this gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.594
EEK17302.1
Hypothetical protein.
  
     0.566
EEK15983.1
Hypothetical protein.
    
  0.565
EEK17711.1
Identified by match to protein family HMM PF07980.
    
  0.565
EEK17468.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
    
  0.565
Your Current Organism:
Porphyromonas uenonis 603
NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.