STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEK16034.1Identified by match to protein family HMM PF02566. (132 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.739
EEK16016.1
Hypothetical protein.
       0.643
EEK16023.1
Sel1 repeat protein; Identified by match to protein family HMM PF08238.
       0.642
EEK16046.1
3'-5' exonuclease; Identified by match to protein family HMM PF01612.
 
     0.602
lpdA
Dihydrolipoyl dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
    
 0.515
EEK16013.1
Hypothetical protein; Identified by glimmer; putative.
       0.461
EEK17304.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171.
   
 
  0.440
EEK16224.1
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.
   
 
  0.433
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
    0.426
mmdC
Biotin-requiring enzyme; Identified by match to protein family HMM PF00364.
    
  0.426
Your Current Organism:
Porphyromonas uenonis 603
NCBI taxonomy Id: 596327
Other names: P. uenonis 60-3, Porphyromonas uenonis 60-3, Porphyromonas uenonis str. 60-3, Porphyromonas uenonis strain 60-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.