Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEK16995.1 | EEK17460.1 | PORUE0001_0092 | PORUE0001_1605 | Hypothetical protein. | Hypothetical protein. | 0.809 |
EEK16995.1 | EEK17709.1 | PORUE0001_0092 | PORUE0001_1487 | Hypothetical protein. | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | 0.856 |
EEK16995.1 | EEK17730.1 | PORUE0001_0092 | PORUE0001_1491 | Hypothetical protein. | Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.860 |
EEK16995.1 | mraY | PORUE0001_0092 | PORUE0001_1489 | Hypothetical protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.501 |
EEK16995.1 | mrdA | PORUE0001_0092 | PORUE0001_0142 | Hypothetical protein. | Putative penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.813 |
EEK16995.1 | murC | PORUE0001_0092 | PORUE0001_0091 | Hypothetical protein. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.967 |
EEK16995.1 | murD | PORUE0001_0092 | PORUE0001_1490 | Hypothetical protein. | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.873 |
EEK16995.1 | murE | PORUE0001_0092 | PORUE0001_1488 | Hypothetical protein. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.627 |
EEK16995.1 | murF | PORUE0001_0092 | PORUE0001_0947 | Hypothetical protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.766 |
EEK16995.1 | murG | PORUE0001_0092 | PORUE0001_0090 | Hypothetical protein. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.964 |
EEK17460.1 | EEK16995.1 | PORUE0001_1605 | PORUE0001_0092 | Hypothetical protein. | Hypothetical protein. | 0.809 |
EEK17460.1 | EEK17730.1 | PORUE0001_1605 | PORUE0001_1491 | Hypothetical protein. | Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.777 |
EEK17460.1 | murE | PORUE0001_1605 | PORUE0001_1488 | Hypothetical protein. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.616 |
EEK17709.1 | EEK16995.1 | PORUE0001_1487 | PORUE0001_0092 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | Hypothetical protein. | 0.856 |
EEK17709.1 | EEK17730.1 | PORUE0001_1487 | PORUE0001_1491 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.973 |
EEK17709.1 | mraY | PORUE0001_1487 | PORUE0001_1489 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.882 |
EEK17709.1 | mrdA | PORUE0001_1487 | PORUE0001_0142 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | Putative penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.821 |
EEK17709.1 | murC | PORUE0001_1487 | PORUE0001_0091 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.797 |
EEK17709.1 | murD | PORUE0001_1487 | PORUE0001_1490 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.909 |
EEK17709.1 | murE | PORUE0001_1487 | PORUE0001_1488 | Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03793. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.965 |
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