Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEK17489.1 | EEK17490.1 | PORUE0001_1591 | PORUE0001_1585 | Conjugative transposon protein TraE. | TraG family protein. | 0.751 |
EEK17489.1 | EEK17492.1 | PORUE0001_1591 | PORUE0001_1592 | Conjugative transposon protein TraE. | Conjugative transposon protein TraF; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.952 |
EEK17489.1 | EEK17498.1 | PORUE0001_1591 | PORUE0001_1588 | Conjugative transposon protein TraE. | Conjugative transposon protein TraA. | 0.616 |
EEK17489.1 | EEK17499.1 | PORUE0001_1591 | PORUE0001_1594 | Conjugative transposon protein TraE. | Conjugative transposon protein TraI. | 0.912 |
EEK17489.1 | traG-3 | PORUE0001_1591 | PORUE0001_1593 | Conjugative transposon protein TraE. | Conjugation system ATPase, TraG family. | 0.944 |
EEK17489.1 | traG-4 | PORUE0001_1591 | PORUE0001_1923 | Conjugative transposon protein TraE. | Conjugation system ATPase, TraG family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.765 |
EEK17489.1 | traJ | PORUE0001_1591 | PORUE0001_1595 | Conjugative transposon protein TraE. | Conjugative transposon TraJ protein; Identified by match to protein family HMM PF07863. | 0.909 |
EEK17489.1 | traK | PORUE0001_1591 | PORUE0001_0129 | Conjugative transposon protein TraE. | Conjugative transposon TraK protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.774 |
EEK17489.1 | traK-2 | PORUE0001_1591 | PORUE0001_0519 | Conjugative transposon protein TraE. | Conjugative transposon TraK protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.774 |
EEK17489.1 | traK-3 | PORUE0001_1591 | PORUE0001_1596 | Conjugative transposon protein TraE. | Conjugative transposon TraK protein. | 0.781 |
EEK17490.1 | EEK17489.1 | PORUE0001_1585 | PORUE0001_1591 | TraG family protein. | Conjugative transposon protein TraE. | 0.751 |
EEK17490.1 | EEK17492.1 | PORUE0001_1585 | PORUE0001_1592 | TraG family protein. | Conjugative transposon protein TraF; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.612 |
EEK17490.1 | EEK17499.1 | PORUE0001_1585 | PORUE0001_1594 | TraG family protein. | Conjugative transposon protein TraI. | 0.608 |
EEK17490.1 | traG-3 | PORUE0001_1585 | PORUE0001_1593 | TraG family protein. | Conjugation system ATPase, TraG family. | 0.775 |
EEK17490.1 | traG-4 | PORUE0001_1585 | PORUE0001_1923 | TraG family protein. | Conjugation system ATPase, TraG family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.776 |
EEK17490.1 | traJ | PORUE0001_1585 | PORUE0001_1595 | TraG family protein. | Conjugative transposon TraJ protein; Identified by match to protein family HMM PF07863. | 0.773 |
EEK17490.1 | traK | PORUE0001_1585 | PORUE0001_0129 | TraG family protein. | Conjugative transposon TraK protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.761 |
EEK17490.1 | traK-2 | PORUE0001_1585 | PORUE0001_0519 | TraG family protein. | Conjugative transposon TraK protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. | 0.761 |
EEK17490.1 | traK-3 | PORUE0001_1585 | PORUE0001_1596 | TraG family protein. | Conjugative transposon TraK protein. | 0.763 |
EEK17492.1 | EEK17489.1 | PORUE0001_1592 | PORUE0001_1591 | Conjugative transposon protein TraF; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Conjugative transposon protein TraE. | 0.952 |
page 1 of 5