node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEK15978.1 | EEK16638.1 | PORUE0001_0231 | PORUE0001_1707 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | 0.741 |
EEK15978.1 | dnaN | PORUE0001_0231 | PORUE0001_1106 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF02767; match to protein family HMM TIGR00663. | 0.951 |
EEK15978.1 | polA | PORUE0001_0231 | PORUE0001_0489 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.987 |
EEK15978.1 | recA | PORUE0001_0231 | PORUE0001_1326 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.878 |
EEK15978.1 | recQ | PORUE0001_0231 | PORUE0001_0814 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. | 0.801 |
EEK15978.1 | recQ-2 | PORUE0001_0231 | PORUE0001_1555 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | 0.801 |
EEK15978.1 | rpoB | PORUE0001_0231 | PORUE0001_0675 | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
EEK16620.1 | EEK16638.1 | PORUE0001_1706 | PORUE0001_1707 | RecF/RecN/SMC N-terminal domain protein; Identified by match to protein family HMM PF02463. | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | 0.895 |
EEK16638.1 | EEK15978.1 | PORUE0001_1707 | PORUE0001_0231 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | 0.741 |
EEK16638.1 | EEK16620.1 | PORUE0001_1707 | PORUE0001_1706 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | RecF/RecN/SMC N-terminal domain protein; Identified by match to protein family HMM PF02463. | 0.895 |
EEK16638.1 | dnaN | PORUE0001_1707 | PORUE0001_1106 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF02767; match to protein family HMM TIGR00663. | 0.801 |
EEK16638.1 | mutL | PORUE0001_1707 | PORUE0001_0811 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.803 |
EEK16638.1 | polA | PORUE0001_1707 | PORUE0001_0489 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.749 |
EEK16638.1 | recA | PORUE0001_1707 | PORUE0001_1326 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.853 |
EEK16638.1 | recQ | PORUE0001_1707 | PORUE0001_0814 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. | 0.859 |
EEK16638.1 | recQ-2 | PORUE0001_1707 | PORUE0001_1555 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | 0.859 |
EEK16638.1 | rpoB | PORUE0001_1707 | PORUE0001_0675 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.780 |
EEK16638.1 | uvrB | PORUE0001_1707 | PORUE0001_1648 | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.800 |
dnaN | EEK15978.1 | PORUE0001_1106 | PORUE0001_0231 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF02767; match to protein family HMM TIGR00663. | SWIM zinc finger domain protein; Identified by match to protein family HMM PF04434. | 0.951 |
dnaN | EEK16638.1 | PORUE0001_1106 | PORUE0001_1707 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF02767; match to protein family HMM TIGR00663. | UvrD/REP helicase; Identified by match to protein family HMM PF00580. | 0.801 |