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fgenesh2_kg.7__620__AT4G34680.2 protein (Arabidopsis lyrata) - STRING interaction network
"fgenesh2_kg.7__620__AT4G34680.2" - GATA transcription factor in Arabidopsis lyrata
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fgenesh2_kg.7__620__AT4G34680.2GATA transcription factor; Transcriptional activator that specifically binds 5’- GATA-3’ or 5’-GAT-3’ motifs within gene promoters (268 aa)    
Predicted Functional Partners:
fgenesh2_kg.3__2167__AT3G19510.1
Uncharacterized protein (724 aa)
     
 
  0.757
fgenesh2_kg.3__2660__AT3G24500.1
ATMBF1C/MBF1C (148 aa)
           
  0.724
fgenesh2_kg.7__1822__AT4G24540.1
Uncharacterized protein (220 aa)
       
 
  0.691
fgenesh2_kg.2__1097__AT1G68480.1
Uncharacterized protein (253 aa)
       
 
  0.683
scaffold_802850.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (858 aa)
           
  0.614
fgenesh2_kg.1__64__AT1G01650.1
Peptidase (540 aa)
     
   
  0.607
fgenesh2_kg.2__112__AT1G63690.1
Protease-associated domain-containing protein (540 aa)
     
   
  0.596
scaffold_701217.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (670 aa)
           
  0.593
scaffold_401977.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (588 aa)
           
  0.593
fgenesh2_kg.7__3131__AT5G37020.1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (805 aa)
           
  0.593
Your Current Organism:
Arabidopsis lyrata
NCBI taxonomy Id: 59689
Other names: A. lyrata, Arabidopsis lyrata, lyrate rockcress
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