STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (285 aa)    
Predicted Functional Partners:
KPNB1
Karyopherin subunit beta 1.
    
   0.943
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
 
 
   0.942
RPF2
Brix domain-containing protein.
   
   0.904
SIRT1
Sirtuin 1.
    
 0.903
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.871
PUM3
Pumilio RNA binding family member 3.
   
 
 0.870
BYSL
Essential nuclear protein 1.
   
 
 0.868
BRIX1
Biogenesis of ribosomes BRX1.
   
   0.866
EBNA1BP2
Uncharacterized protein.
   
   0.847
FTSJ3
Pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3.
   
 
 0.845
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.