STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A1-2Collagen alpha-1(XI) chain isoform X3. (425 aa)    
Predicted Functional Partners:
COL11A1
Collagen type XI alpha 1 chain.
 
    
0.918
COL9A3
Collagen type IX alpha 3 chain.
 
0.906
COL8A2
Collagen alpha-2(VIII) chain.
 
 
 
0.861
COL25A1
Collagen type XXV alpha 1 chain.
 
 
 
0.845
COL8A1
Collagen type VIII alpha 1 chain.
 
 
0.838
ENSTGUP00000027739
annotation not available
 
  
 
0.807
COL9A2
Collagen alpha-2(IX) chain.
 
0.742
COL19A1
Collagen type XIX alpha 1 chain.
 
 
 
0.587
ENSTGUP00000026075
annotation not available
  
 
  0.549
ENSTGUP00000038659
annotation not available
  
     0.526
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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