FAR1 protein (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAR1

Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. (513 aa)

Predicted Functional Partners:

GNPAT

0.901

FAR2

0.901

FASN

0.645

LOC100231542

0.645

AGPS

0.585

AASDH

0.580

HSD17B12

0.561

PEX7

0.523

FIG4

0.513

CROT

0.504

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AASDH	FAR1	ENSTGUP00000007655	ENSTGUP00000005393	Aminoadipate-semialdehyde dehydrogenase.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.580
AASDH	FAR2	ENSTGUP00000007655	ENSTGUP00000031645	Aminoadipate-semialdehyde dehydrogenase.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.580
AASDH	FASN	ENSTGUP00000007655	ENSTGUP00000003991	Aminoadipate-semialdehyde dehydrogenase.	Fatty acid synthase.	0.950
AASDH	HSD17B12	ENSTGUP00000007655	ENSTGUP00000026424	Aminoadipate-semialdehyde dehydrogenase.	Hydroxysteroid 17-beta dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.763
AASDH	LOC100231542	ENSTGUP00000007655	ENSTGUP00000032677	Aminoadipate-semialdehyde dehydrogenase.	Uncharacterized protein.	0.950
AGPS	FAR1	ENSTGUP00000009343	ENSTGUP00000005393	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.585
AGPS	FAR2	ENSTGUP00000009343	ENSTGUP00000031645	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.500
AGPS	GNPAT	ENSTGUP00000009343	ENSTGUP00000010173	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Dihydroxyacetone phosphate acyltransferase.	0.983
AGPS	HSD17B12	ENSTGUP00000009343	ENSTGUP00000026424	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Hydroxysteroid 17-beta dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.675
AGPS	PEX7	ENSTGUP00000009343	ENSTGUP00000028495	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	Peroxisomal biogenesis factor 7.	0.891
CROT	FAR1	ENSTGUP00000001419	ENSTGUP00000005393	Carnitine O-octanoyltransferase.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.504
FAR1	AASDH	ENSTGUP00000005393	ENSTGUP00000007655	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Aminoadipate-semialdehyde dehydrogenase.	0.580
FAR1	AGPS	ENSTGUP00000005393	ENSTGUP00000009343	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.585
FAR1	CROT	ENSTGUP00000005393	ENSTGUP00000001419	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Carnitine O-octanoyltransferase.	0.504
FAR1	FAR2	ENSTGUP00000005393	ENSTGUP00000031645	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	0.901
FAR1	FASN	ENSTGUP00000005393	ENSTGUP00000003991	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Fatty acid synthase.	0.645
FAR1	FIG4	ENSTGUP00000005393	ENSTGUP00000033206	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	FIG4 phosphoinositide 5-phosphatase.	0.513
FAR1	GNPAT	ENSTGUP00000005393	ENSTGUP00000010173	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Dihydroxyacetone phosphate acyltransferase.	0.901
FAR1	HSD17B12	ENSTGUP00000005393	ENSTGUP00000026424	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Hydroxysteroid 17-beta dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.561
FAR1	LOC100231542	ENSTGUP00000005393	ENSTGUP00000032677	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Uncharacterized protein.	0.645