STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP1BRibosomal RNA processing 1B. (689 aa)    
Predicted Functional Partners:
BRIX1
Biogenesis of ribosomes BRX1.
   
 
 0.997
RSL1D1
Ribosomal L1 domain containing 1.
   
 
 0.995
MAK16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 
 0.994
EBNA1BP2
Uncharacterized protein.
   
 
 0.993
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.990
RPF1
Ribosome production factor 1 homolog.
   
 
 0.989
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.987
RSL24D1
Ribosomal L24 domain containing 1.
   
 
 0.983
DDX18
RNA helicase.
   
 0.978
RPF2
Brix domain-containing protein.
   
 
 0.976
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.