STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLTMSAFB like transcription modulator. (1027 aa)    
Predicted Functional Partners:
LOC115490559
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.591
LOC100219036
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.591
PPIG
Peptidylprolyl isomerase G.
   
  0.565
RBM25
Uncharacterized protein.
   
 
 0.551
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.529
MYSM1
Uncharacterized protein.
   
 0.484
EIF3A
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 0.478
SRSF2
RRM domain-containing protein.
    
 0.476
SF3B1
Splicing factor 3b subunit 1.
   
 0.475
SNRPE
Small nuclear ribonucleoprotein polypeptide E.
   
 0.466
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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