STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBR1T-box brain transcription factor 1. (642 aa)    
Predicted Functional Partners:
NEUROD6
Neurogenic differentiation factor.
   
  
 0.844
PAX6
Paired box 6.
   
 0.762
SATB2
DNA-binding protein SATB.
   
  
 0.746
LOC115494783
LOW QUALITY PROTEIN: homeobox protein EMX1-like.
     
 0.701
ENSTGUP00000031977
annotation not available
     
 0.701
FOXG1
Forkhead box protein G1.
   
 
 0.691
RORA
RAR related orphan receptor A.
      
 0.673
CASK
Uncharacterized protein; Belongs to the MAGUK family.
    
 
 0.660
CUX1
Homeobox protein cut-like.
    
 
 0.630
SAP30
Sin3A associated protein 30.
      
 0.610
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.