STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D15TBC1 domain family member 15. (685 aa)    
Predicted Functional Partners:
RAB7A
RAB7A, member RAS oncogene family.
    
 0.972
RAB7B
RAB7B, member RAS oncogene family.
   
 0.971
GABARAPL2
Uncharacterized protein.
   
 0.965
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.958
ZNF536
Zinc finger protein 536.
      
 0.729
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.686
CPNE8
Copine 8.
      
 0.651
TBC1D20
TBC1 domain family member 20.
   
  
 0.644
USH1C
Harmonin isoform X1.
      
 0.637
RAB9A
RAB9A, member RAS oncogene family.
   
 0.610
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.