STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Rtf2 domain-containing protein. (331 aa)    
Predicted Functional Partners:
ZFAND4
Zinc finger AN1-type containing 4.
      
 0.642
PKDREJ
Polycystic kidney disease and receptor for egg jelly-related protein.
   
  
 0.633
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.572
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
      
 0.556
SPACA9
Sperm acrosome associated 9.
      
 0.549
RBM25
Uncharacterized protein.
      
 0.537
H0ZW31_TAEGU
Uncharacterized protein.
      
 0.531
PRPF18
SFM domain-containing protein.
      
 0.522
ESS2
Ess-2 splicing factor homolog.
      
 0.522
LOC100224234
Tripartite motif-containing protein 69.
    
 
 0.489
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.