STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDB2Damage specific DNA binding protein 2. (464 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 0.999
COP1
COP1 E3 ubiquitin ligase.
    
 0.979
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.975
RBX1
Ring-box 1.
    
 0.968
USP24
Ubiquitin specific peptidase 24; Belongs to the peptidase C19 family.
    
 0.962
CUL4B
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.949
CUL4A
Cullin 4A; Belongs to the cullin family.
    
 0.949
DET1
Uncharacterized protein.
     
 0.939
XPC
Uncharacterized protein.
   
 0.897
COPS5
MPN domain-containing protein.
   
 0.886
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.