MB protein (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MB

Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. (154 aa)

Predicted Functional Partners:

ODC1

0.840

TGFB2

0.824

NGB

0.793

ADGB

0.755

SLN

0.740

CYB5R4

0.687

INS

0.675

RPL6

0.675

MYL1

0.667

ALB

0.648

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGB	MB	ENSTGUP00000027950	ENSTGUP00000011155	Uncharacterized protein.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.755
ADGB	NGB	ENSTGUP00000027950	ENSTGUP00000025035	Uncharacterized protein.	Neuroglobin; Belongs to the globin family.	0.836
ALB	INS	ENSTGUP00000033723	ENSTGUP00000009610	Uncharacterized protein.	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.724
ALB	MB	ENSTGUP00000033723	ENSTGUP00000011155	Uncharacterized protein.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.648
CYB5R4	MB	ENSTGUP00000012883	ENSTGUP00000011155	Cytochrome b5 reductase 4.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.687
CYB5R4	NGB	ENSTGUP00000012883	ENSTGUP00000025035	Cytochrome b5 reductase 4.	Neuroglobin; Belongs to the globin family.	0.687
INS	ALB	ENSTGUP00000009610	ENSTGUP00000033723	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	Uncharacterized protein.	0.724
INS	MB	ENSTGUP00000009610	ENSTGUP00000011155	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.675
MB	ADGB	ENSTGUP00000011155	ENSTGUP00000027950	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Uncharacterized protein.	0.755
MB	ALB	ENSTGUP00000011155	ENSTGUP00000033723	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Uncharacterized protein.	0.648
MB	CYB5R4	ENSTGUP00000011155	ENSTGUP00000012883	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Cytochrome b5 reductase 4.	0.687
MB	INS	ENSTGUP00000011155	ENSTGUP00000009610	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.675
MB	MYL1	ENSTGUP00000011155	ENSTGUP00000033330	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Uncharacterized protein.	0.667
MB	NGB	ENSTGUP00000011155	ENSTGUP00000025035	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Neuroglobin; Belongs to the globin family.	0.793
MB	ODC1	ENSTGUP00000011155	ENSTGUP00000030558	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.840
MB	RPL6	ENSTGUP00000011155	ENSTGUP00000023570	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.675
MB	SLN	ENSTGUP00000011155	ENSTGUP00000021823	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Sarcolipin.	0.740
MB	TGFB2	ENSTGUP00000011155	ENSTGUP00000030074	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.824
MYL1	MB	ENSTGUP00000033330	ENSTGUP00000011155	Uncharacterized protein.	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	0.667
MYL1	SLN	ENSTGUP00000033330	ENSTGUP00000021823	Uncharacterized protein.	Sarcolipin.	0.642