STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL10A1C1q domain-containing protein. (677 aa)    
Predicted Functional Partners:
COL28A1-2
Uncharacterized protein.
 
  
  0.687
COL11A1
Collagen type XI alpha 1 chain.
 
 
 
0.597
ENSTGUP00000026075
annotation not available
  
 
  0.559
ENSTGUP00000029833
annotation not available
 
  
  0.529
ENSTGUP00000020832
annotation not available
  
     0.526
THEGL
Testicular haploid expressed gene protein-like.
  
     0.518
ENSTGUP00000033419
annotation not available
 
 
  0.497
IHH
Indian hedgehog signaling molecule.
      
 0.485
SOX9
SRY-box transcription factor 9.
    
 
 0.483
COL11A1-2
Collagen alpha-1(XI) chain isoform X3.
 
 
 
0.479
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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