STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCL11BBAF chromatin remodeling complex subunit BCL11B. (883 aa)    
Predicted Functional Partners:
TBR1
T-box brain transcription factor 1.
    
 
 0.599
BATF
Basic leucine zipper ATF-like transcription factor.
    
 0.577
CUX1
Homeobox protein cut-like.
    
 
 0.548
BCL11A
BAF chromatin remodeling complex subunit BCL11A.
  
 
0.547
ARID2
Uncharacterized protein.
     
 0.535
SATB2
DNA-binding protein SATB.
   
 
 0.531
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.519
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.519
NKAP
NFKB activating protein.
      
 0.499
NR2F1
Nuclear receptor subfamily 2 group F member 1.
    
 0.495
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.