STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKRD42Ankyrin repeat domain 42. (519 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
 
  
 
 0.735
CCDC90B
Coiled-coil domain containing 90B.
      
 0.573
NOB1
NIN1 (RPN12) binding protein 1 homolog.
   
 
 0.569
ACBD3
Acyl-CoA binding domain containing 3.
    
 0.565
PPP1R8
Protein phosphatase 1 regulatory subunit 8.
   
  
 0.561
HSDL2
Hydroxysteroid dehydrogenase like 2.
    
 0.548
IQUB
IQ motif and ubiquitin domain containing.
   
 
 0.546
DNAAF1
Dynein assembly factor 1, axonemal.
   
  0.534
LOC100229913
RRM domain-containing protein.
    
 
 0.515
SGTB
Small glutamine rich tetratricopeptide repeat containing beta.
    
 0.490
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.