STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLNS1AUncharacterized protein. (238 aa)    
Predicted Functional Partners:
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.995
PRMT5
Protein arginine methyltransferase 5.
   
 0.965
ENSTGUP00000021808
annotation not available
   
 0.965
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.963
SMN1
Tudor domain-containing protein.
   
 0.945
LSM10
Sm domain-containing protein.
   
 0.940
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.937
LOC100232675
WD repeat domain 77.
   
 0.932
LOC100218892
Methylosome protein 50-like.
   
 0.932
SNRPE
Small nuclear ribonucleoprotein polypeptide E.
   
 0.907
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.