STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROBO1Uncharacterized protein. (1614 aa)    
Predicted Functional Partners:
SLIT1
Slit guidance ligand 1.
   
 0.837
SLIT2
Slit guidance ligand 2.
   
 0.789
PRDM1
PR/SET domain 1.
      
 0.753
SLIT3
Slit guidance ligand 3.
   
 0.740
NYX
Nyctalopin.
   
 0.718
GAP43
Growth associated protein 43.
      
 0.614
SNCA
Alpha-synuclein; Belongs to the synuclein family.
      
 0.607
PLXNA1
Plexin A1.
   
  
 0.597
LRIT3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.585
GBE1
1,4-alpha-glucan branching enzyme 1.
      
 0.585
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.