STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMX1ALIM homeobox transcription factor 1 alpha. (591 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.583
LDB2
LIM domain binding 2.
    
 0.583
MSX1
Msh homeobox 1.
    
 
 0.523
OTX1
Homeobox protein OTX1.
    
 
 0.483
OTX2
Orthodenticle homeobox 2.
    
 
0.475
ALDH9A1
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
      
 0.473
ASCL1
Achaete-scute complex protein.
    
 0.447
PAX2
Paired box 2.
    
 
 0.420
PAX5
Paired box 5.
    
 
 0.420
LOC100228206
Collagen type V alpha 1 chain.
   
 
 0.413
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.