LOC105759685 protein (Taeniopygia guttata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105759685

Mab-21 domain-containing protein. (519 aa)

Predicted Functional Partners:

FANCM

0.577

POLD2

0.565

ENSTGUP00000031407

0.530

SMN1

0.520

SNRPD2

0.477

SNRPE

0.473

SNRPF

0.438

ENSTGUP00000025959

0.432

POLD1

0.432

LSM10

0.424

Your Current Organism:

Taeniopygia guttata

NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTGUP00000025959	ENSTGUP00000031407	ENSTGUP00000025959	ENSTGUP00000031407	annotation not available	annotation not available	0.592
ENSTGUP00000025959	FANCM	ENSTGUP00000025959	ENSTGUP00000013620	annotation not available	Uncharacterized protein.	0.830
ENSTGUP00000025959	LOC105759685	ENSTGUP00000025959	ENSTGUP00000017875	annotation not available	Mab-21 domain-containing protein.	0.432
ENSTGUP00000025959	POLD2	ENSTGUP00000025959	ENSTGUP00000003661	annotation not available	DNA polymerase delta 2, accessory subunit.	0.985
ENSTGUP00000031407	ENSTGUP00000025959	ENSTGUP00000031407	ENSTGUP00000025959	annotation not available	annotation not available	0.592
ENSTGUP00000031407	FANCM	ENSTGUP00000031407	ENSTGUP00000013620	annotation not available	Uncharacterized protein.	0.999
ENSTGUP00000031407	LOC105759685	ENSTGUP00000031407	ENSTGUP00000017875	annotation not available	Mab-21 domain-containing protein.	0.530
ENSTGUP00000031407	POLD1	ENSTGUP00000031407	ENSTGUP00000036478	annotation not available	DNA polymerase delta catalytic subunit.	0.592
FANCM	ENSTGUP00000025959	ENSTGUP00000013620	ENSTGUP00000025959	Uncharacterized protein.	annotation not available	0.830
FANCM	ENSTGUP00000031407	ENSTGUP00000013620	ENSTGUP00000031407	Uncharacterized protein.	annotation not available	0.999
FANCM	LOC105759685	ENSTGUP00000013620	ENSTGUP00000017875	Uncharacterized protein.	Mab-21 domain-containing protein.	0.577
FANCM	POLD1	ENSTGUP00000013620	ENSTGUP00000036478	Uncharacterized protein.	DNA polymerase delta catalytic subunit.	0.830
LOC105759685	ENSTGUP00000025959	ENSTGUP00000017875	ENSTGUP00000025959	Mab-21 domain-containing protein.	annotation not available	0.432
LOC105759685	ENSTGUP00000031407	ENSTGUP00000017875	ENSTGUP00000031407	Mab-21 domain-containing protein.	annotation not available	0.530
LOC105759685	FANCM	ENSTGUP00000017875	ENSTGUP00000013620	Mab-21 domain-containing protein.	Uncharacterized protein.	0.577
LOC105759685	LSM10	ENSTGUP00000017875	ENSTGUP00000023266	Mab-21 domain-containing protein.	Sm domain-containing protein.	0.424
LOC105759685	POLD1	ENSTGUP00000017875	ENSTGUP00000036478	Mab-21 domain-containing protein.	DNA polymerase delta catalytic subunit.	0.432
LOC105759685	POLD2	ENSTGUP00000017875	ENSTGUP00000003661	Mab-21 domain-containing protein.	DNA polymerase delta 2, accessory subunit.	0.565
LOC105759685	SMN1	ENSTGUP00000017875	ENSTGUP00000038501	Mab-21 domain-containing protein.	Tudor domain-containing protein.	0.520
LOC105759685	SNRPD2	ENSTGUP00000017875	ENSTGUP00000019555	Mab-21 domain-containing protein.	Small nuclear ribonucleoprotein D2 polypeptide.	0.477