STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H0ZYT8_TAEGUUncharacterized protein. (1509 aa)    
Predicted Functional Partners:
RAB25
RAB25, member RAS oncogene family.
    
 
 0.665
VIPAS39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog.
   
  
 0.587
RAB11B
Uncharacterized protein.
    
 
 0.586
LOC100231666
Uncharacterized protein.
    
 
 0.586
RAB11A
RAB11A, member RAS oncogene family.
    
 
 0.586
RAB11FIP3
RAB11 family interacting protein 3.
    
 
 0.580
RAB11FIP4
RAB11 family interacting protein 4.
    
 
 0.545
VPS45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.536
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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