STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144ARBR-type E3 ubiquitin transferase. (292 aa)    
Predicted Functional Partners:
PRKDC
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.828
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.734
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.688
ENSTGUP00000022414
Ubiquitin-conjugating enzyme E2 L5-like isoform X1.
   
 0.642
ENSTGUP00000035639
annotation not available
    
 0.639
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.625
RNF216
Ring finger protein 216.
    
 0.567
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.554
UBB
Ubiquitin B.
    
 0.542
ENSTGUP00000037953
annotation not available
    
 0.542
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.