STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XYLT1Xylosyltransferase 1. (917 aa)    
Predicted Functional Partners:
B4GALT7
Beta-1,4-galactosyltransferase 7.
     
 0.945
XYLT2
Xylosyltransferase 2.
  
  
 
0.901
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.676
SDC2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.501
B3GALT6
Hexosyltransferase.
    
 
 0.493
FAM20B
FAM20B glycosaminoglycan xylosylkinase.
      
 0.487
DCN
Decorin; May affect the rate of fibrils formation.
    
 0.453
UXS1
UDP-glucuronate decarboxylase 1.
   
  
 0.451
BCAN
Brevican.
     
 0.447
SDC3
Syndecan 3.
     
 0.421
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.