STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMPDL3ASphingomyelin phosphodiesterase acid like 3A. (510 aa)    
Predicted Functional Partners:
BRINP1
BMP/retinoic acid inducible neural specific 1.
      
 0.636
SQOR
Pyr_redox_2 domain-containing protein.
      
 0.563
CDC40
Cell division cycle 40.
      
 0.507
KCTD20
Potassium channel tetramerization domain containing 20.
      
 0.481
BTBD10
BTB domain containing 10.
      
 0.481
ARHGAP1
Rho GTPase activating protein 1.
      
 0.473
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.