STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNB2Lamin B2; Belongs to the intermediate filament family. (612 aa)    
Predicted Functional Partners:
CASP6
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.960
LOC100222370
Peptidase S1 domain-containing protein.
    
 0.902
LOC115492161
Barrier-to-autointegration factor.
   
 0.739
LOC115492161-2
Barrier-to-autointegration factor.
   
 0.739
CASP3
Caspase 3; Belongs to the peptidase C14A family.
   
 0.641
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.636
LEMD3
LEM domain containing 3.
    
 0.625
SUN1
SUN domain-containing protein.
    
 0.619
TMPO
LEM domain-containing protein.
   
 0.554
ERMN
Ermin.
   
  
 0.518
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.