STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle-associated membrane protein 8. (75 aa)    
Predicted Functional Partners:
STX17
Syntaxin 17; Belongs to the syntaxin family.
   
 0.999
SNAP29
t-SNARE coiled-coil homology domain-containing protein.
   
 0.997
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.993
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.990
BET1
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.984
STX12
Syntaxin 12; Belongs to the syntaxin family.
   
 0.983
VPS39
VPS39 subunit of HOPS complex.
    
 
 0.978
GOSR1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 
 0.972
VPS41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
 
 0.970
STX8
Syntaxin 8.
    
 0.968
Your Current Organism:
Taeniopygia guttata
NCBI taxonomy Id: 59729
Other names: Poephila guttata, T. guttata, Taenopygia guttata, zebra finch
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